Index

B

bootstrap_1D() (in module pyMFI.MFI1D), [1] bootstrap_2D_new() (in module pyMFI.MFI), [1]

bootstrap_2D_to_1D() (in module pyMFI.MFI), [1] bootstrap_forw_back() (in module pyMFI.MFI1D), [1]

C

coft() (in module pyMFI.MFI), [1]

F

FFT_intg_2D() (in module pyMFI.MFI), [1] find_alanine_dipeptide_input() (in module pyMFI.run_plumed), [1] find_hp_force() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1] find_lw_force() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

find_periodic_point() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1] find_periodic_point_numpy() (in module pyMFI.MFI1D), [1] find_uw_force() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

G

get_cutoff() (in module pyMFI.MFI), [1] get_cutoff_1D() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

get_cutoff_1D_nonjit() (in module pyMFI.MFI1D), [1]

I

index() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

intg_1D() (in module pyMFI.MFI1D), [1] intg_2D() (in module pyMFI.MFI), [1] intgrad2() (in module pyMFI.MFI), [1]

L

load_HILLS() (in module pyMFI.MFI1D), [1] load_HILLS_2D() (in module pyMFI.MFI), [1] load_npy() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

load_pkl() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1] load_position() (in module pyMFI.MFI1D), [1] load_position_2D() (in module pyMFI.MFI), [1]

M

make_external_bias_1D() (in module pyMFI.run_plumed), [1] mean_force_variance() (in module pyMFI.MFI), [1] MFI_1D() (in module pyMFI.MFI1D), [1] MFI_2D() (in module pyMFI.MFI), [1]

module pyMFI, [1] pyMFI.MFI, [1] pyMFI.MFI1D, [1] pyMFI.run_plumed, [1]

P

patch_2D() (in module pyMFI.MFI), [1] patch_2D_simple() (in module pyMFI.MFI), [1] patch_forces() (in module pyMFI.MFI1D), [1] patch_forces_ofe() (in module pyMFI.MFI1D), [1] patch_forces_ofe_AD() (in module pyMFI.MFI1D), [1] patch_to_base_variance() (in module pyMFI.MFI), [1] plot_bootstrap() (in module pyMFI.MFI), [1] plot_bootstrap_2D_to_1D() (in module pyMFI.MFI), [1] plot_patch_2D() (in module pyMFI.MFI), [1] plot_recap() (in module pyMFI.MFI1D), [1]

plot_recap_2D() (in module pyMFI.MFI), [1] print_progress() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1] pyMFI module, [1] pyMFI.MFI module, [1] pyMFI.MFI1D module, [1] pyMFI.run_plumed module, [1]

R

reduce_to_window() (in module pyMFI.MFI), [1] run_2D_Invernizzi() (in module pyMFI.run_plumed), [1] run_alanine_dipeptide() (in module pyMFI.run_plumed), [1]

run_alanine_dipeptide_1D() (in module pyMFI.run_plumed), [1] run_langevin1D() (in module pyMFI.run_plumed), [1] run_langevin1D_plumed_fes() (in module pyMFI.run_plumed), [1] run_langevin2D() (in module pyMFI.run_plumed), [1]

S

save_npy() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

save_pkl() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]

W

window_forces() (in module pyMFI.MFI1D), [1]

Z

zero_to_nan() (in module pyMFI.MFI), [1] (in module pyMFI.MFI1D), [1]